Computational models created in-house

BRAINCELL (neuron and astrocyte) Models

• Model 1: Basket Cell - GABA Dynamics
• Model 2: CA1 Pyramidal Neuron - Spiking Activity
• Model 3: CA1 Astrocyte - Calcium Waves

To integrate custom mechanisms into BrainCell, follow these steps:

1. Upload the ZIP Archive: The archive should include:
   • A cell model with all mechanisms and geometry.
   • A DLL file specific to the mechanisms.
2. Unpack the Archive: Extract the contents of the ZIP archive into the Nanogeometry folder of BrainCell.
3. Load the HOC File: At the very beginning of activating the BrainCell Export (BrainCell) option, load the corresponding HOC file from the archive.

ARACHNE (network) models

• Model 1: GABA Waves in CA1 Interneuron Network
• Model 2: Rippling Waves in Interneuron-Pyramidal Network
• Model 3: Stochastic Dynamics in Interneuron-Pyramidal Network

To use ARACHNE, download and install the software first:
Download Arachne Installer for Windows

All uploaded files must be unzipped and placed in the following directory: C:\Users<username>\arachne\local
Replace with your actual Windows username.

ASTRO (astrocyte) Models

• Model 1: Example Nanostructure - MATLAB File
• Model 2: Single Astrocyte Finger - MATLAB File